Francisco Dini-Andreote

Huck Early Career Chair in Microbial Community Ecology, Assistant Professor of Plant Science

Francisco Dini-Andreote

Research Summary

Microbiome, plant-microbe interactions, and community ecology. Harnessing the plant microbiome to enhance protection against biotic and abiotic stresses.

Huck Graduate Students

Huck Affiliations

Links

Most Recent Publications

Fusaric acid mediates the assembly of disease-suppressive rhizosphere microbiota via induced shifts in plant root exudates

Xue Jin, Huiting Jia, Lingyi Ran, Fengzhi Wu, Junjie Liu, Klaus Schlaeppi, Francisco Dini-Andreote, Zhong Wei, Xingang Zhou, 2024, Nature Communications

Effects of plant tissue permeability on invasion and population bottlenecks of a phytopathogen

Gaofei Jiang, Yuling Zhang, Min Chen, Josep Ramoneda, Liangliang Han, Yu Shi, Rémi Peyraud, Yikui Wang, Xiaojun Shi, Xinping Chen, Wei Ding, Alexandre Jousset, Yasufumi Hikichi, Kouhei Ohnishi, Fang Jie Zhao, Yangchun Xu, Qirong Shen, Francisco Dini-Andreote, Yong Zhang, Zhong Wei, 2024, Nature Communications

Protist communities as indicators of fertilization-induced changes in a species-rich grassland ecosystem

Shuo Sun, Alexandre Jousset, Stefan Geisen, Enrique Lara, Pengfei Zhang, Rong Li, Francisco Dini-Andreote, Mohammadhossein Ravanbakhsh, Qirong Shen, George A. Kowalchuk, Wu Xiong, 2024, Agro-Ecosystems

Divergent impacts of fertilization regimes on below-ground prokaryotic and eukaryotic communities in the Tibetan Plateau

Shuo Sun, Chen Liu, Yun Zhang, Yang Yue, Shiqi Sun, Yang Bai, Pengfei Zhang, Mohammadhossein Ravanbakhsh, Francisco Dini-Andreote, Rong Li, Zhenhua Zhang, Alexandre Jousset, Qirong Shen, George A Kowalchuk, Wu Xiong, 2024, Journal of Environmental Management

Biotic and abiotic factors interplay in structuring the dynamics of microbial co-occurrence patterns in tropical mountainsides

Hao Wu, Tianheng Gao, Francisco Dini-Andreote, Nengwen Xiao, Lu Zhang, Ismael Aaron Kimirei, Jianjun Wang, 2024, Environmental Research

Effects of soil type and salinity levels on the performance and bacteriome of the halophyte Atriplex nummularia (old man saltbush)

Douglas Alfradique Monteiro, Gordon F. Custer, Luiz Fernando Martins, Fabiano de Carvalho Balieiro, Francisco Dini-Andreote, Caio Tavora Coelho da Costa Rachid, 2024, Plant and Soil on p. 621-637

Body size mediates the functional potential of soil organisms by diversity and community assembly across soil aggregates

Guofan Zhu, Lu Luan, Shungui Zhou, Francisco Dini-Andreote, Mohammad Bahram, Yunfeng Yang, Stefan Geisen, Jie Zheng, Shaopeng Wang, Yuji Jiang, 2024, Microbiological Research

Investigating antibiotic free feed additives for growth promotion in poultry: effects on performance and microbiota

A Fonseca, S Kenney, E Van Syoc, S Bierly, Francisco Dini-Andreote, F Dini Andreote, Justin Silverman, J Boney, Erika Ganda, 2024, Poultry Science on p. 103604

The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection

Dorota Kawa, Benjamin Thiombiano, Mahdere Z. Shimels, Tamera Taylor, Aimee Walmsley, Hannah E. Vahldick, Dominika Rybka, Marcio F.A. Leite, Zayan Musa, Alexander Bucksch, Francisco Dini-Andreote, Mario Schilder, Alexander J. Chen, Jiregna Daksa, Desalegn W. Etalo, Taye Tessema, Eiko E. Kuramae, Jos M. Raaijmakers, Harro Bouwmeester, Siobhan M. Brady, 2024, Cell Reports

Partitioning the effects of coffee-Urochloa intercropping on soil microbial properties at a centimeter-scale

Luana Bresciani, Caio César Gomes Freitas, Felipe Martins do Rêgo Barros, Fernando Dini Andreote, Francisco Dini-Andreote, 2024, Applied Soil Ecology

Most-Cited Papers

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

Francisco Dini-Andreote, James C. Stegen, Jan Dirk Van Elsas, Joana Falcão Salles, 2015, Proceedings of the National Academy of Sciences of the United States of America on p. E1326-E1332

Effects of plastic mulch film residues on wheat rhizosphere and soil properties

Yueling Qi, Adam Ossowicki, Xiaomei Yang, Esperanza Huerta Lwanga, Francisco Dini-Andreote, Violette Geissen, Paolina Garbeva, 2020, Journal of Hazardous Materials on p. 121711

Ecology and evolution of plant microbiomes

Viviane Cordovez, Francisco Dini-Andreote, Víctor J. Carrión, Jos M. Raaijmakers, 2019, Annual Review of Microbiology on p. 69--88

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation

Phillipe M. Rosado, Deborah C.A. Leite, Gustavo A.S. Duarte, Ricardo M. Chaloub, Guillaume Jospin, Ulisses Nunes da Rocha, João P. Saraiva, Francisco Dini-Andreote, Jonathan A. Eisen, David G. Bourne, Raquel S. Peixoto, 2019, ISME Journal on p. 921-936

Community Assembly Processes of the Microbial Rare Biosphere

Xiu Jia, Francisco Dini-Andreote, Joana Falcão Salles, 2018, Trends in Microbiology on p. 738-747

Dynamics of bacterial community succession in a salt marsh chronosequence: Evidences for temporal niche partitioning

Francisco Dini-Andreote, Michele De Cássia Pereira E Silva, Xavier Triadó-Margarit, Emilio O. Casamayor, Jan Dirk Van Elsas, Joana Falcão Salles, 2014, ISME Journal on p. 1989-2001

The impact of failure: Unsuccessful bacterial invasions steer the soil microbial community away from the invader's niche

C. A. Mallon, X. Le Roux, G. S. Van Doorn, F. Dini-Andreote, F. Poly, J. F. Salles, 2018, ISME Journal on p. 728-741

Organism body size structures the soil microbial and nematode community assembly at a continental and global scale

Lu Luan, Yuji Jiang, Menghua Cheng, Francisco Dini-Andreote, Yueyu Sui, Qinsong Xu, Stefan Geisen, Bo Sun, 2020, Nature Communications on p. 6406

Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes

Xingang Zhou, Jingyu Zhang, Muhammad Khashi u Rahman, Danmei Gao, Zhong Wei, Fengzhi Wu, Francisco Dini-Andreote, 2023, Molecular Plant on p. 849-864

Climate change affects key nitrogen-fixing bacterial populations on coral reefs

Henrique F. Santos, Flávia L. Carmo, Gustavo Duarte, Francisco Dini-Andreote, Clovis B. Castro, Alexandre S. Rosado, Jan Dirk Van Elsas, Raquel S. Peixoto, 2014, ISME Journal on p. 2272-2279

News Articles Featuring Francisco Dini-Andreote

Sep 25, 2024

Plant scientist named Huck Early Career Chair in Microbial Community Ecology

Francisco Dini-Andreote, assistant professor of plant science in the College of Agricultural Sciences at Penn State, has been awarded the Dorothy Foehr Huck and J. Lloyd Huck Early Career Chair in Microbial Community Ecology.

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Sep 24, 2024

$1M USDA grant to perfect weed killing method in organic crop production

The U.S. Department of Agriculture (USDA) has awarded a four-year, $1 million grant to a team led by plant scientists and an economist from Penn State to investigate anaerobic soil disinfestation to support transitioning from conventional to organic production systems.

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Aug 28, 2024

Research teams receive $1.1 million to study microbiomes in agriculture

Two Penn State-led research teams have received funding from the U.S. Department of Agriculture’s National Institute of Food and Agriculture for projects investigating the ways microbiomes — the microorganisms in a particular environment, such as in soil or a living organism — can affect disease dynamics in agriculture.

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Jul 18, 2024

Microbiome Kickstart Workshop will assist newcomers to the field

The One Health Microbiome Center at Penn State has opened registration for its fifth annual Microbiome Kickstart Workshop. This free, comprehensive, workshop is a cornerstone training event for emerging researchers to launch their microbiome studies and network at Penn State.

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Apr 12, 2024

Probiotic feed additive boosts growth, health in poultry in place of antibiotics

Antimicrobial resistance is an increasingly serious threat for public health, and the use of antimicrobials in livestock feed has been a major contributing factor in the emergence and spread of antimicrobial resistance to many drugs, according to the U.S. National Institutes of Health.

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Feb 16, 2024

Common plant could help reduce food insecurity, researchers find

Fast-growing aquatic fern has the nutritional content to serve as a potentially vital food source after a catastrophe and could be relevant now

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Dec 05, 2023

Microbes essential to plants are disappearing due to global warming

A new study predicts that plant-friendly microbes could be hindered by global warming

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Nov 20, 2023

Researchers predict climate change-driven reduction in beneficial plant microbes

Bacteria that benefit plants are thought to be a critical contributor to crops and other ecosystems, but climate change may reduce their numbers, according to a new study by an international team of researchers. They published their findings in Nature Food.

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Feb 27, 2023

New predictive models developed for bacterial diversity of soils

A new set of quantitative models that incorporates pH into the metabolic theory of ecology (MTE) has been developed by an international team that includes Penn State assistant professor of plant science Francisco Dini-Andreote.

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Oct 19, 2021

Grant to fund research on biological approach to manage soil pathogens and pests

In an effort to boost the profitability and sustainability of organic specialty crop productions, a team of scientists is improving and optimizing a method for controlling soilborne pests and pathogens and promoting soil health that prevents oxygen from entering the soil.

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