Anton Bankevich
Assistant Professor of Computer Science and Engineering
Most Recent Publications
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
Anton Bankevich, Andrey V. Bzikadze, Mikhail Kolmogorov, Dmitry Antipov, Pavel A. Pevzner, 2022, Nature Biotechnology on p. 1075-1081
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs
Tatiana Dvorkina, Anton Bankevich, Alexei Sorokin, Fan Yang, Boahemaa Adu-Oppong, Ryan Williams, Keith Turner, Pavel A. Pevzner, 2021, Microbiome
Mosaicflye: resolving long mosaic repeats using long reads
Anton Bankevich, Pavel Pevzner, 2020, on p. 226-228
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W. Dang, Vanessa V. Phelan, Robert A. Quinn, Anton Bankevich, John T. Chang, Tariq M. Rana, Douglas J. Conrad, William J. Sandborn, Larry Smarr, Pieter C. Dorrestein, Pavel A. Pevzner, Rob Knight, 2019, Genome Biology on p. 1-14
CloudSPAdes: Assembly of synthetic long reads using de Bruijn graphs
Ivan Tolstoganov, Anton Bankevich, Zhoutao Chen, Pavel A. Pevzner, 2019, Bioinformatics on p. i61-i70
Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity
Anton Bankevich, Pavel A. Pevzner, 2018, Cell Systems on p. 192-200.e3
Long Reads Enable Accurate Estimates of Complexity of Metagenomes
Anton Bankevich, Pavel Pevzner, 2018, on p. 1-20
Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly
Soonok Kim, Yun Sung Cho, Hak Min Kim, Oksung Chung, Hyunho Kim, Sungwoong Jho, Hong Seomun, Jeongho Kim, Woo Young Bang, Changmu Kim, Junghwa An, Chang Hwan Bae, Youngjune Bhak, Sungwon Jeon, Hyejun Yoon, Yumi Kim, Je Hoon Jun, Hye Jin Lee, Suan Cho, Olga Uphyrkina, Aleksey Kostyria, John Goodrich, Dale Miquelle, Melody Roelke, John Lewis, Andrey Yurchenko, Anton Bankevich, Juok Cho, Semin Lee, Jeremy S. Edwards, Jessica A. Weber, Jo Cook, Sangsoo Kim, Hang Lee, Andrea Manica, Ilbeum Lee, Stephen J. O'Brien, Jong Bhak, Joo Hong Yeo, 2016, Genome Biology
TruSPAdes: Barcode assembly of TruSeq synthetic long reads
Anton Bankevich, Pavel A. Pevzner, 2016, Nature Methods on p. 248-250
DipSPAdes: Assembler for Highly Polymorphic Diploid Genomes
Yana Safonova, Anton Bankevich, Pavel A. Pevzner, 2015, Journal of Computational Biology on p. 528-545
Most-Cited Papers
Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly
Soonok Kim, Yun Sung Cho, Hak Min Kim, Oksung Chung, Hyunho Kim, Sungwoong Jho, Hong Seomun, Jeongho Kim, Woo Young Bang, Changmu Kim, Junghwa An, Chang Hwan Bae, Youngjune Bhak, Sungwon Jeon, Hyejun Yoon, Yumi Kim, Je Hoon Jun, Hye Jin Lee, Suan Cho, Olga Uphyrkina, Aleksey Kostyria, John Goodrich, Dale Miquelle, Melody Roelke, John Lewis, Andrey Yurchenko, Anton Bankevich, Juok Cho, Semin Lee, Jeremy S. Edwards, Jessica A. Weber, Jo Cook, Sangsoo Kim, Hang Lee, Andrea Manica, Ilbeum Lee, Stephen J. O'Brien, Jong Bhak, Joo Hong Yeo, 2016, Genome Biology
DipSPAdes: Assembler for Highly Polymorphic Diploid Genomes
Yana Safonova, Anton Bankevich, Pavel A. Pevzner, 2015, Journal of Computational Biology on p. 528-545
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
Anton Bankevich, Andrey V. Bzikadze, Mikhail Kolmogorov, Dmitry Antipov, Pavel A. Pevzner, 2022, Nature Biotechnology on p. 1075-1081
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W. Dang, Vanessa V. Phelan, Robert A. Quinn, Anton Bankevich, John T. Chang, Tariq M. Rana, Douglas J. Conrad, William J. Sandborn, Larry Smarr, Pieter C. Dorrestein, Pavel A. Pevzner, Rob Knight, 2019, Genome Biology on p. 1-14
TruSPAdes: Barcode assembly of TruSeq synthetic long reads
Anton Bankevich, Pavel A. Pevzner, 2016, Nature Methods on p. 248-250
CloudSPAdes: Assembly of synthetic long reads using de Bruijn graphs
Ivan Tolstoganov, Anton Bankevich, Zhoutao Chen, Pavel A. Pevzner, 2019, Bioinformatics on p. i61-i70
Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity
Anton Bankevich, Pavel A. Pevzner, 2018, Cell Systems on p. 192-200.e3
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs
Tatiana Dvorkina, Anton Bankevich, Alexei Sorokin, Fan Yang, Boahemaa Adu-Oppong, Ryan Williams, Keith Turner, Pavel A. Pevzner, 2021, Microbiome
Mosaicflye: resolving long mosaic repeats using long reads
Anton Bankevich, Pavel Pevzner, 2020, on p. 226-228
Long Reads Enable Accurate Estimates of Complexity of Metagenomes
Anton Bankevich, Pavel Pevzner, 2018, on p. 1-20