Daniel Allen

Assistant Professor of Aquatic Ecology

Daniel Allen

Research Summary

The relationship between community structure and ecosystem processes in rivers and streams, and factors which influence this relationship across local, landscape, and regional spatial scales.

Huck Graduate Students

Huck Affiliations

Links

Most Recent Publications

Combined benthic and stream edge sampling better represent macroinvertebrate assemblages than benthic sampling alone along an aridity gradient

Brian A. Gill, Daniel C. Allen, Meryl C. Mims, Thomas M. Neeson, Albert Ruhi, Carla L. Atkinson, Arial J. Shogren, Travis M. Apgar, Zacchaeus G. Compson, Stephen Cook, Daryl R. Trumbo, Michelle H. Busch, Kelsey D. Hollien, Kyle Leathers, Megan C. Malish, Grace L. O'Malley, Samuel Silknetter, Chelsea R. Smith, Howard Dunleavy, Michael T. Bogan, 2024, Limnology and Oceanography: Methods on p. 208-216

Global patterns of allochthony in stream–riparian meta-ecosystems

Daniel C. Allen, James Larson, Christina A. Murphy, Erica A. Garcia, Kurt E. Anderson, Michelle H. Busch, Alba Argerich, Alice M. Belskis, Kierstyn T. Higgins, Brooke E. Penaluna, Veronica Saenz, Jay Jones, Matt R. Whiles, 2024, Ecology Letters

Drying, more than warming, alters ecosystem functioning in streams with different energy pathways

Daniel Nelson, Michelle H. Busch, Darin A. Kopp, Daniel C. Allen, 2023, Functional Ecology on p. 1989-2001

The Music of Rivers: The Mathematics of Waves Reveals Global Structure and Drivers of Streamflow Regime

Brian C. Brown, Aimee H. Fulerton, Darin Kopp, Flavia Tromboni, Arial J. Shogren, J. Angus Webb, Claire Ruffing, Matthew Heaton, Lenka Kuglerová, Daniel C. Allen, Lillian McGill, Jay P. Zarnetske, Matt R. Whiles, Jeremy B. Jones, Benjamin W. Abbott, 2023, Water Resources Research

The only lasting truth is change: multiple dimensions of biodiversity show historical legacy effects in community assembly processes of freshwater fish

Michelle H. Busch, Daniel C. Allen, Katharine A. Marske, Lucie Kuczynski, 2023, Oikos

Taxonomic identity, biodiversity, and antecedent disturbances shape the dimensional stability of stream invertebrates

Daniel C. Allen, Brian A. Gill, Anya Metcalfe, Sophia Bonjour, Scott Starr, Junna Wang, Diana Valentin, Nancy B. Grimm, 2023, Limnology And Oceanography Letters on p. 464-472

Small increases in stream drying can dramatically reduce ecosystem connectivity

Megan C. Malish, Shang Gao, Darin Kopp, Yang Hong, Daniel C. Allen, Thomas Neeson, 2023, Ecosphere

Causes, Responses, and Implications of Anthropogenic versus Natural Flow Intermittence in River Networks

Thibault Datry, Amélie Truchy, Julian D. Olden, Michelle H. Busch, Rachel Stubbington, Walter K. Dodds, Sam Zipper, Songyan Yu, Mathis L. Messager, Jonathan D. Tonkin, Kendra E. Kaiser, John C. Hammond, Eric K. Moody, Ryan M. Burrows, Romain Sarremejane, Amanda G. Delvecchia, Megan L. Fork, Chelsea J. Little, Richard H. Walker, Annika W. Walters, Daniel Allen, 2023, BioScience on p. 9-22

DNA metabarcoding captures different macroinvertebrate biodiversity than morphological identification approaches across a continental scale

Sean C. Emmons, Zacchaeus G. Compson, Megan C. Malish, Michelle H. Busch, Veronica Saenz, Kierstyn T. Higgins, Daniel C. Allen, 2023, Environmental DNA

Genetic and ecological drivers of molt in a migratory bird

Andrea Contina, Christen Bossu, Daniel Allen, Michael Wunder, Kristen Ruegg, 2023, Scientific Reports

Most-Cited Papers

Global patterns and drivers of ecosystem functioning in rivers and riparian zones

Scott Tiegs, David Costello, Mark Isken, Guy Woodward, Peter McIntyre, Mark Gessner, Eric Chauvet, Natalie Griffiths, Alex Flecker, Vicenc Acuna, Vicenç Acuña, Ricardo Albariño, Ricardo Albarino, Daniel Allen, Cecilia Alonso, Patricio Andino, Clay Arango, Jukka Aroviita, Marcus V.M. Barbosa, Barbosa, Marcus V. M., Leon Barmuta, Colden Baxter, Bell, Thomas D. C., Thomas D.C. Bell, Brent Bellinger, Luz Boyero, Lee Brown, Andreas Bruder, Denise Bruesewitz, Francis Burdon, Marcos Callisto, Cristina Canhoto, Krista Capps, Maria Castillo, Joanne Clapcott, Fanny Colas, Checo Colón-Gaud, Checo Colon-Gaud, Julien Cornut, Verónica Crespo-Pérez, Veronica Crespo-Perez, Wyatt Cross, Joseph Culp, Michael Danger, Olivier Dangles, Elvira De Eyto, de Eyto, Elvira, Alison Derry, Diaz Villanueva, Veronica, Veronica Díaz Villanueva, Michael Douglas, Arturo Elosegi, Andrea Encalada, Sally Entrekin, Rodrigo Espinosa, Diana Ethaiya, Veronica Ferreira, Carmen Ferriol, Kyla Flanagan, Tadeusz Fleituch, Shah, Jennifer J. Follstad, Jennifer J.Follstad Shah, André Frainer Barbosa, Andre Frainer, Nikolai Friberg, Paul Frost, Erica Garcia, Liliana Lago, Pavel Ernesto García Soto, Garcia Soto, Pavel Ernesto, Sudeep Ghate, Darren Giling, Alan Gilmer, José Francisco Gonçalves, Goncalves, Jose Francisco, Jr., Rosario Gonzales, Graca, Manuel A. S., Manuel A.S. Graça, Mike Grace, Hans-Peter Grossart, François Guérold, Francois Guerold, Vlad Gulis, Luiz Hepp, Scott Higgins, Takuo Hishi, Joseph Huddart, John Hudson, Samantha Imberger, Carlos Iñiguez-Armijos, Carlos Iniguez-Armijos, Tomoya Iwata, David Janetski, Eleanor Jennings, Andrea Kirkwood, Aaron Koning, Sarian Kosten, Kevin Kuehn, Hjalmar Laudon, Peter Leavitt, Aurea L.Lemes Da Silva, Lemes da Silva, Aurea L., Shawn Leroux, Carri Leroy, Peter Lisi, Richard MacKenzie, Amy Marcarelli, Frank Masese, Brendan Mckie, Adriana Oliveira Medeiros, Oliveira Medeiros, Adriana, Kristian Meissner, Marko Miliša, Marko Milisa, Shailendra Mishra, Yo Miyake, Ashley Moerke, Shorok Mombrikotb, Rob Mooney, Tim Moulton, Timo Muotka, Junjiro Negishi, Vinicius Neres-Lima, Mika Nieminen, Jorge Nimptsch, Jakub Ondruch, Riku Paavola, Isabel Pardo, Christopher Patrick, Edwin T.H.M. Peeters, Peeters, Edwin T. H. M., Jesus Pozo, Catherine Pringle, Aaron Prussian, Estefania Quenta, Antonio Quesada, Brian Reid, John Richardson, Anna Rigosi, Jose Rincon, José Rincón, Geta Risnoveanu, Geta Rîşnoveanu, C Robinson, Lorena Rodríguez-Gallego, Lorena Rodriguez-Gallego, Todd Royer, James Rusak, Anna Santamans, Geza Selmeczy, Gelas Simiyu, Agnija Skuja, Jerzy Smykla, Kandikere Sridhar, Ryan Sponseller, Aaron Stoler, Christopher Swan, David Szlag, Franco Teixeira-De Mello, Teixeira-de Mello, Franco, Jonathan Tonkin, Sari Uusheimo, Allison Veach, Sirje Vilbaste, Lena B.M. Vought, Vought, Lena B. M., Chiao-Ping Wang, Jackson Webster, Paul Wilson, Stefan Woelfl, Marguerite Xenopoulos, Adam Yates, Chihiro Yoshimura, Catherine Yule, Yixin Zhang, Jacob Zwart, 2019, Science advances on p. eaav0486

A global analysis of terrestrial plant litter dynamics in non-perennial waterways

T. Datry, A. Foulquier, R. Corti, D. Von Schiller, von Schiller, D., K. Tockner, C. Mendoza-Lera, J. Clement, J. C. Clément, M. Gessner, M. Moleón, M. Moleon, R. Stubbington, B. Gücker, B. Gucker, R. Albarino, R. Albarinõ, Daniel Allen, F. Altermatt, Arce, M., I, M. I. Arce, S. Arnon, D. Banas, A. Banegas-Medina, E. Beller, M. Blanchette, J. Blanco-Libreros, J. Blessing, I. G. Boëchat, I. Boechat, K. Boersma, M. Bogan, N. Bonada, N. Bond, Brintrup Barria, K. C., K. C. Brintrup Barriá, A. Bruder, R. Burrows, T. Cancellario, C. Canhoto, S. Carlson, S. Cauvy-Fraunie, S. Cauvy-Fraunié, N. Cid, M. Danger, Bianca De Freitas Terra, Terra, Bianca de Freitas, A. M. De Girolamo, De Girolamo, A. M., Evans De La Barra, de La Barra, Evans, del Campo, R., R. Del Campo, V. Diaz-Villanueva, F. Dyer, A. Elosegi, E. Faye, C. Febria, B. Four, S. Gafny, S. Ghate, R. Gomez, R. Gómez, L. Gómez-Gener, L. Gomez-Gener, Graca, M. A. S., M. A.S. Gracą, S. Guareschi, F. Hoppeler, J. Hwan, J. I. Jones, Jones, J., I, S. Kubheka, A. Laini, S. Langhans, C. Leigh, C. Little, S. Lorenz, J. Marshall, E. Martín, E Martin, A. McIntosh, E. I. Meyer, Meyer, E., I, M. Miliša, M. Milisa, M. Mlambo, M. Morais, N. Moya, P. Negus, D. Niyogi, A. Papatheodoulou, I Pardo, P. Paril, P. Pařil, S. Pauls, V. Pešić, V Pesic, M. Polasek, M. Polášek, C Robinson, P. Rodriguez-Lozano, P. Rodríguez-Lozano, R. Rolls, M. Sanchez-Montoya, M. M. Sánchez-Montoya, A. Savić, A. Savic, O. Shumilova, K. Sridhar, A. Steward, R. Storey, A. Taleb, A. Uzan, Ross Vander Vorste, Vander Vorste, Ross, N. Waltham, C. Woelfle-Erskine, D. Zak, C. Zarfl, A. Zoppini, 2018, Nature Geoscience on p. 497-503

Pervasive changes in stream intermittency across the United States

Samuel C. Zipper, John C. Hammond, Margaret Shanafield, Margaret Zimmer, Thibault Datry, C. Nathan Jones, Kendra E. Kaiser, Sarah E. Godsey, Ryan M. Burrows, Joanna R. Blaszczak, Michelle H. Busch, Adam N. Price, Kate S. Boersma, Adam S. Ward, Katie Costigan, George H. Allen, Corey A. Krabbenhoft, Walter K. Dodds, Meryl C. Mims, Julian D. Olden, Stephanie K. Kampf, Amy J. Burgin, Daniel C. Allen, 2021, Environmental Research Letters

Assessing placement bias of the global river gauge network

Corey Krabbenhoft, George Allen, Peirong Lin, Sarah Godsey, Daniel Allen, Ryan Burrows, Amanda DelVecchia, Ken Fritz, Margaret Shanafield, Amy Burgin, Margaret Zimmer, Thibault Datry, Walter Dodds, C Jones, Meryl Mims, Catherin Franklin, J Hammond, Sam Zipper, Adam Ward, Katie Costigan, Hylke Beck, Julian Olden, 2022, Nature Sustainability on p. 586-592

Zero or not? Causes and consequences of zero-flow stream gage readings

Margaret A. Zimmer, Kendra E. Kaiser, Joanna R. Blaszczak, Samuel C. Zipper, John C. Hammond, Ken M. Fritz, Katie H. Costigan, Jacob Hosen, Sarah E. Godsey, George H. Allen, Stephanie Kampf, Ryan M. Burrows, Corey A. Krabbenhoft, Walter Dodds, Rebecca Hale, Julian D. Olden, Margaret Shanafield, Amanda G. DelVecchia, Adam S. Ward, Meryl C. Mims, Thibault Datry, Michael T. Bogan, Kate S. Boersma, Michelle H. Busch, C. Nathan Jones, Amy J. Burgin, Daniel C. Allen, 2020, Wiley Interdisciplinary Reviews: Water

Spatial Patterns and Drivers of Nonperennial Flow Regimes in the Contiguous United States

John C. Hammond, Margaret Zimmer, Margaret Shanafield, Kendra Kaiser, Sarah E. Godsey, Meryl C. Mims, Samuel C. Zipper, Ryan M. Burrows, Stephanie K. Kampf, Walter Dodds, C. Nathan Jones, Corey A. Krabbenhoft, Kate S. Boersma, Thibault Datry, Julian D. Olden, George H. Allen, Adam N. Price, Katie Costigan, Rebecca Hale, Adam S. Ward, Daniel C. Allen, 2021, Geophysical Research Letters

What's in a name? Patterns, trends, and suggestions for defining non-perennial rivers and streams

Michelle H. Busch, Katie H. Costigan, Ken M. Fritz, Thibault Datry, Corey A. Krabbenhoft, John C. Hammond, Margaret Zimmer, Julian D. Olden, Ryan M. Burrows, Walter K. Dodds, Kate S. Boersma, Margaret Shanafield, Stephanie K. Kampf, Meryl C. Mims, Michael T. Bogan, Adam S. Ward, Mariana Perez Rocha, Sarah Godsey, George H. Allen, Joanna R. Blaszczak, C. Nathan Jones, Daniel C. Allen, 2020, Water (Switzerland)

Citizen scientists document long-term streamflow declines in intermittent rivers of the desert southwest, USA

Daniel C. Allen, Darin A. Kopp, Katie H. Costigan, Thibault Datry, Bernard Hugueny, Dale S. Turner, Gita S. Bodner, Timothy J. Flood, 2019, Freshwater Science on p. 244-256

River ecosystem conceptual models and non-perennial rivers: A critical review

Daniel C. Allen, Thibault Datry, Kate S. Boersma, Michael T. Bogan, Andrew J. Boulton, Daniel Bruno, Michelle H. Busch, Katie H. Costigan, Walter K. Dodds, Ken M. Fritz, Sarah E. Godsey, Jeremy B. Jones, Tatiana Kaletova, Stephanie K. Kampf, Meryl C. Mims, Thomas M. Neeson, Julian D. Olden, Amandine V. Pastor, N. Le Roy Poff, Benjamin L. Ruddell, Albert Ruhi, Gabriel Singer, Paolo Vezza, Adam S. Ward, Margaret Zimmer, 2020, Wiley Interdisciplinary Reviews: Water

Sediment Respiration Pulses in Intermittent Rivers and Ephemeral Streams

D. von Schiller, T. Datry, R. Corti, A. Foulquier, K. Tockner, R. Marcé, G. García-Baquero, I. Odriozola, B. Obrador, A. Elosegi, C. Mendoza-Lera, M. O. Gessner, R. Stubbington, R. Albariño, D. C. Allen, F. Altermatt, M. I. Arce, S. Arnon, D. Banas, A. Banegas-Medina, E. Beller, M. L. Blanchette, J. F. Blanco-Libreros, J. Blessing, I. G. Boëchat, K. S. Boersma, M. T. Bogan, N. Bonada, N. R. Bond, K. Brintrup, A. Bruder, R. M. Burrows, T. Cancellario, S. M. Carlson, S. Cauvy-Fraunié, N. Cid, M. Danger, B. de Freitas Terra, A. Dehedin, A. M. De Girolamo, R. del Campo, V. Díaz-Villanueva, C. P. Duerdoth, F. Dyer, E. Faye, C. Febria, R. Figueroa, B. Four, S. Gafny, R. Gómez, L. Gómez-Gener, M. A.S. Graça, S. Guareschi, B. Gücker, F. Hoppeler, J. L. Hwan, S. Kubheka, A. Laini, S. D. Langhans, C. Leigh, C. J. Little, S. Lorenz, J. Marshall, E. J. Martín, A. McIntosh, E. I. Meyer, M. Miliša, M. C. Mlambo, M. Moleón, M. Morais, P. Negus, D. Niyogi, A. Papatheodoulou, I. Pardo, P. Pařil, V. Pešić, C. Piscart, M. Polášek, P. Rodríguez-Lozano, R. J. Rolls, M. M. Sánchez-Montoya, A. Savić, O. Shumilova, A. Steward, A. Taleb, A. Uzan, R. Vander Vorste, N. Waltham, C. Woelfle-Erskine, D. Zak, C. Zarfl, A. Zoppini, 2019, Global Biogeochemical Cycles on p. 1251-1263